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Home » Brownies And Cookies

Best Chocolate Thumbprint Cookies

picture of zoha
Modified: Jan 12, 2025 · Published: Oct 25, 2024 by Zoha · This post may contain affiliate links · 16 Comments
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These Chocolate Thumbprint Cookies are nostalgic and celebratory all at once: buttery, chewy chocolate cookies filled with a rich, silky chocolate ganache. They are easy to make, easy to munch on, and look absolutely adorable. They are also so fun to bake with your kids or family, making them fantastic for the Holidays and Christmas!

7 chocolate thumbprint cookies with chocolate ganache decorated with freeze dried strawberries. focus is on one cookie from an angle
bitten chocolate thumbprint cookie leaning against a stack of cookies

Read the full blog post below for detailed notes, tips, tricks, photos and videos.

Jump to:
  • What are chocolate thumbprint cookies?
  • Why are these the best chocolate thumbprint cookies?
  • Tips to perfect this recipe
  • Video tutorial
  • Process with photos
  • Ideas to decorate chocolate thumbprint cookies
  • Frequently asked questions
  • More cookie recipes
  • Best Chocolate Thumbprint Cookies Recipe

What are chocolate thumbprint cookies?

Classic thumbprint cookies are small sugar cookies that have a "thumbprint" or indentation on top, which is filled with different kinds of toppings like jam and ganache. They are very popular especially during the Holidays and Christmas, as they have a fun, celebratory look and are easy to bake. Chocolate thumbprint cookies are the chocolate version, made with a chocolate cookie and filled with chocolate ganache. They are cute, small, chewy and delicious!

Why are these the best chocolate thumbprint cookies?

I grew up obsessed with the chocolate thumbprint cookies I used to get from a bakery near my house. I used to get a dozen and munch them up in a single sitting. Now that I am older though, I recognize those cookies weren't actually that great: they were quite dry and crumbly, and the ganache tasted more like sugar than chocolate. So I wanted to pay homage to my childhood favorite by making an elevated version, and this recipe is exactly that!

I think these are the best chocolate thumbprint cookies because:

  • They taste chocolatey. Not sugary, not like vanilla. These are proper chocolate cookies and taste like it: rich, decadent and delicious!
  • They have the perfect texture. The cookies are set around the edges but have a soft, moist and chewy interior. The ganache has the perfect "soft set", which means it is just firm enough at room temperature that it stays in place, but is creamy and silky when you bite into it. The combination is just divine
  • They are very easy and fuss free to make. This recipe has no fancy ingredients or steps, and comes together very easily, making it very beginner (and kid) friendly
  • They are SO fun. Fun to make, fun sized, fun to look at, fun to eat. Make them with your kids or families and you will have a blast
4 chocolate thumbprint cookies stacked on top of each other with more cookies in front and in the background
4 chocolate thumbprint cookies cut into half and stacked on top of each other. each cookie has a chewy chocolate center and is filled with chocolate ganache

Tips to perfect this recipe

Here are a few tips to help you make the best chocolate thumbprint cookies:

  • Weigh the ingredients with a scale for accuracy. This is especially important with the flour and cocoa powder, as it is very easy to put too much if you use measuring cups. Here is an inexpensive scale on Amazon that works really well
  • Make sure the butter and eggs are at room temperature. I recommend taking them out of the fridge 2 hours beforehand. This will make it much easier to make the cookie dough
  • Use Dutch processed cocoa powder. It tastes much better than regular cocoa powder! I love this one from Rodelle
  • Make sure to chill the cookie balls before baking. You only need to chill for 30 minutes, but it will help make sure the cookies don't spread out too much
  • Don't overbake the cookies. Take them out when they feel set on the edges and slightly soft in the middle. They will set more with time. It's always a great idea to bake one cookie as a test first!
  • Use good quality chocolate for the ganache, and make sure it's something you like the flavor of! I used a mixture of Lindt dark chocolate and Lindt milk chocolate
close up picture of chocolate thumbprint cookie with chocolate ganache decorated with crushed freeze dried strawberry. a bite has been taken out of the cookie
close up of one chocolate thumbprint cookie from the top. it is a small cookie with chocolate ganache inside and decorated with freeze dried strawberries. surrounded by more cookies on the side which are out of focus

Video tutorial

Here is a short video tutorial for this recipe that I recommend watching:

Process with photos

The detailed recipe is provided in the recipe card at the bottom of this post, but let's go over the steps with photos to help you visualize everything.

Whisk the butter and sugar until light, fluffy and creamy:

butter and sugar in a glass bowl
whisked butter and sugar in a glass bowl looking light and fluffy

Add the eggs and vanilla, and whisk again until combined:

eggs and vanilla added to whisked butter and sugar in a glass bowl
eggs whisked into butter and sugar in a glass bowl

Sift in the dry ingredients and fold into a cookie dough:

dry ingredients sifted on top of wet ingredients in a glass bowl to make chocolate cookie dough
chocolate cookie dough in a glass bowl with a rubber spatula

Shape into 1" balls, and use the back of a ½ teaspoon measure (or something of similar size) to press "thumbprints" into each cookie. Chill the balls:

small chocolate cookie dough balls in a baking sheet, with a hand making "thumbprints" in them by pressing in the back of a small spoon
chocolate cookie dough balls with thumbprints made in them in a large baking sheet

Prepare the chocolate ganache while the cookie balls chill:

chocolate and cream in a small glass bowl
smooth and shiny chocolate ganache in a small bowl with a spoon inside

Bake the cookies, and press them again with a larger spoon measure when they are fresh out of the oven to make the indentation deeper. Fill generously with the ganache:

hand pressing the back of a spoon in baked chocolate cookies in a baking sheet to make indentations in them
a baking sheet with lots of small chocolate cookies filled with chocolate ganache

Cool, decorate, serve and enjoy!

lots of small chocolate thumbprint cookies on a parchment paper sheet. they are small round cookies with chocolate ganache inside and decorated with freeze dried strawberries
stack of chocolate thumbprint cookie cut into half placed horizontally on parchment paper to show the inside and the ganache filling

Ideas to decorate chocolate thumbprint cookies

If you're baking for the holidays, you may want the cookies to look extra special! Here are a few easy decoration ideas:

  • Decorate with crushed freeze dried strawberries. This is what I did and I think the pink color looks so pretty! Just make sure to crush and sprinkle the strawberries quickly as they get moist and sticky fairly quickly
  • Use any other freeze dried fruit, or a combination! Different kinds of berries would be lovely to add color and a light flavor
  • Decorate with colorful sprinkles. Or even silver and golden ones
  • Play around the the filling itself. Maybe you can do different types of chocolate ganache (like dark and white), and swirl them with each other!
  • Roll the cookie dough balls in sugar before baking. This will add a "glittery" effect to the cookies

Frequently asked questions

Is it necessary to chill the cookie dough?

Yes, you do have to chill the cookie dough, but only for ~30 minutes. Shape the dough into individual cookies, place onto a baking sheet, and then refrigerate. This will help ensure the cookies don't spread out too much in the oven and maintain their shape. Baking without chilling will result in cookies that are too flat and therefore don't have enough room to hold a good amount of ganache.

Why did my cookies lose their indentation during baking?

This is normal - the cookies puff up as they bake, which makes the thumbprints less prominent. Worry not, though, as you can press them down again as soon as they are out of the oven to bring back the thumbprints.

How can I make the cookies more crumbly / buttery?

If you want the cookies to be less soft / chewy and more on the crumbly side, you can bake for 1-2 minutes longer.

Can I use a different type of chocolate for the ganache?

I find semi-sweet chocolate works best, but yes, you can use a different type of chocolate for the ganache based on your preference. Just know that if you use milk or white chocolate, you may need to reduce the amount of the cream to get the right consistency.

How to store these chocolate thumbprint cookies?

Keep the cookies in an airtight container at room temperature for 2-3 days, or in the fridge if storing for longer. They are best eaten within 1-2 days, though!

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close up picture of chocolate thumbprint cookie with chocolate ganache decorated with crushed freeze dried strawberry. a bite has been taken out of the cookie

Best Chocolate Thumbprint Cookies Recipe


5 Stars 4 Stars 3 Stars 2 Stars 1 Star

4.7 from 7 reviews

  • Author: Zoha
  • Total Time: 90 min with cooling
  • Yield: 26 small cookies
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Description

Decadent and chewy chocolate cookies filled with a rich, silky chocolate ganache - they are delicious, easy and so fun!


Ingredients

Chocolate Cookies:

  • ¾ cup unsalted butter (170g or 12 tbsp), softened at room temp
  • 1 cup granulated sugar (200g)
  • 1 large egg
  • 1 egg yolk
  • 1 tsp vanilla
  • 1 ½ cups all purpose flour (195g)
  • ½ cup Dutch processed cocoa powder (50g)
  • ½ tsp baking powder
  • ¼ tsp baking soda
  • ½ tsp salt

Chocolate Ganache:

  • 150g semi-sweet chocolate 
  • 75g heavy cream (about ⅓ cup)

Serving:

  • Crushed freeze dried strawberries for decoration; optional


Instructions

Chocolate Cookies:

  • Whisk the softened butter and sugar for 2-3 minutes until the mixture looks really light and fluffy, scraping the bowl at least twice in the middle
  • Add the egg, egg yolk and vanilla, and whisk again until the ingredients are combined. Scrape the bowl again
  • Sift and mix the dry ingredients in a separate bowl. Add the dry ingredients to the wet ingredients in 2-3 batches, folding gently with a rubber spatula. Try not to overmix the dough and stop as soon as the dry ingredients are combined. The result should be a soft but workable cookie dough
  • Line 1-2 large baking sheets with parchment paper
  • Shape the cookie dough into 25g balls, about 1" in diameter each. This should make about ~26 balls. Use minimal pressure to make the balls and remove any cracks from the surface, but don't over work them as that will cause them to become greasy
  • Place the balls on the lined baking sheets, keeping about 2" between each
  • Use the back of a ½ teaspoon measure (or something of similar size; it should be a round shape that is smaller than the size of the cookie ball) to press "thumbprints" into each cookie ball. This will also naturally flatten each ball slightly. You can use your thumbs but it is easier and more consistent with a spoon measure
  • Place the sheets in the fridge to chill for 30 minutes (or ~15 min in the freezer). In the meanwhile, work on the chocolate ganache (see below)
  • In the last 15 minutes of chilling, pre-heat the oven to 375F (conventional, no fan)
  • Once the cookie balls have chilled and oven has pre-heated, bake the cookies for ~9-11 minutes. 9 min will yield softer, chewier cookies while they will be firmer at 11 minutes. I baked mine for 10 minutes, and strongly recommend baking one cookie as a test first
  • As soon as the cookies are out of the oven and are still hot, use a larger spoon measure (like 1 tbsp) to press down gently on the cookies again. They puff up and partly lose the thumbprint in the oven, so this step helps bring it back
  • Let them cool at room temperature for 10 minutes

Chocolate Ganache:

  • Add the chopped chocolate / chips to a bowl
  • Heat the cream until it just starts to simmer. Pour over the chocolate, making sure the chocolate is covered in the cream. Cover and wait 5 minutes
  • Gently stir until the chocolate fully melts and a smooth, shiny chocolate ganache forms. Let it cool and thicken up at room temperature while you bake the cookies

Assembly & serving:

  • Once the cookies and ganache have both cooled down, fill each cookie generously with the ganache. I just do this with a spoon
  • Let them rest for ~30 or so minutes so the ganache can set more
  • Decorate however you like; I used crushed freeze dried strawberries
  • Serve & enjoy!

Video Tutorial:

 

Notes

  • I highly recommend baking one cookie as a test first, and letting it cool down. This will help you decide exactly how long you should bake to achieve the texture you want
  • It is important to press down on the cookies quickly after baking them while they're still hot to make the thumbprints again. They are still soft when they're hot so you can gently alter their shape
  • Store the cookies at room temperature in an airtight container for 2-3 days
  • Prep Time: 40 min
  • Cook Time: 10 min
  • Category: Dessert
  • Cuisine: American

Did you make this recipe?

Leave a review and tag @bakewithzoha on Instagram!

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Comments

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  1. Alishba says

    October 25, 2024 at 2:31 pm

    Hi Zoha! My family and I are SET for the holidays with these delicious recipes you’ve been releasing. These cookies were PERFECT. Thank you!!!

    Reply
    • Zoha says

      October 31, 2024 at 8:13 pm

      Aww thanks Alishba!

      Reply
    • Rania says

      February 04, 2025 at 2:32 am

      They turned out AMAZING!!

      Reply
  2. SS says

    October 31, 2024 at 12:10 pm

    I tried them and they turned out soo good!

    Reply
    • Zoha says

      October 31, 2024 at 7:55 pm

      YAY! Glad to hear that!

      Reply
  3. khudija arif says

    November 03, 2024 at 2:35 am

    decadent

    Reply
    • Zoha says

      November 04, 2024 at 2:17 pm

      Thank you!

      Reply
  4. Ayesha says

    November 08, 2024 at 5:23 pm

    Delicious! Thank you for the wonderful and easy recipe. I’m thinking of making them for a party tomorrow, can I freeze the unbaked cookies and bake them tomorrow?

    Reply
  5. farwy says

    November 14, 2024 at 5:47 pm

    The cookies came out yummy but my ganache was pretty bitter. it also was mostly on the liquidy side- was it supposed to firm up at all?

    Reply
  6. Faiza says

    November 19, 2024 at 9:56 pm

    oh masha Allah i tried them they tasted good abit sweeter though but great..lovely choclty..but they flattened..still really good

    Reply
  7. Vanita Sharma says

    November 23, 2024 at 9:35 pm

    hi zoha looks yummy recipe,just wanted to ask can I replace eggs with flaxseed paste

    Reply
  8. Charlotte says

    December 07, 2024 at 4:36 pm

    These look decadent! I would love to add them to my Christmas cookie platters that I gift to friends. My only question is ... are they stackable? Or still a little sticky so they can't be piled with other cookies?

    Reply
  9. Shal says

    December 13, 2024 at 4:57 pm

    Hey
    So my dough was still sticky not shiny like yours. It was tough to make perfect rounds like yours.
    So I couldn’t even make the proper indentations 😒
    What did I miss? How could I fix it? I wonder how come no one else had this issue?!
    I ‘ve tried a few of your recipes and they have always worked for me. Not sure what happened here. Any suggestions would be helpful!
    Though I feel you’re probably super busy with being a mommy at the moment 😊
    So enjoy you’re holidays with your loved ones!

    Reply
    • Shal says

      December 15, 2024 at 11:36 am

      Update -
      I figured out what I did wrong. So ignore my question above!
      Thanks!

      Different question -
      1- can I freeze the dough and bake later?
      2- how can I save the baked cookies? Are they stackable? Will the ganache harden? (I don’t have much experience with Ganache)

      Thanks!
      Happy Holidays

      Reply
      • Zoha says

        December 23, 2024 at 1:21 am

        So sorry for the delay as I am on maternity leave! You can definitely freeze the dough but let it thaw in the fridge before baking. The ganache consistency will depend on the type of chocolate you use. For a hardened ganache you can use 1.5x the amount of chocolate as cream.

        Reply
  10. Maham says

    February 24, 2025 at 12:47 pm

    Turned out absolutely amazing!!

    Reply
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Hi, I'm Zoha! Self taught home-baker, massive sweet tooth, lover of all things baked and content creator behind Bake With Zoha.

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